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Showing posts with the label Biopython
Why Installing Package And Module Not Same In Python?

Why Installing Package And Module Not Same In Python?

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I want to install the Biopython module. So I used the command sudo apt-get install python-biopython… Read more Why Installing Package And Module Not Same In Python?
Parsing A Genbank File Format With Biopython's Seqio

Parsing A Genbank File Format With Biopython's Seqio

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I'm trying to parse a protein genbank file format, Here's an example file (example.protein.… Read more Parsing A Genbank File Format With Biopython's Seqio
Remove Heteroatoms From Pdb

Remove Heteroatoms From Pdb

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The heteroatoms from pdb file has to be removed. Here is the code but it did not work with my test … Read more Remove Heteroatoms From Pdb
Muscle Alignment In Python

Muscle Alignment In Python

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I have a problem with printing my output from muscle aligning in python. My code is: from Bio.Align… Read more Muscle Alignment In Python
Biopython Alignio Valueerror Says Strings Must Be Same Length?

Biopython Alignio Valueerror Says Strings Must Be Same Length?

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Input fasta-format text file: http://www.jcvi.org/cgi-bin/tigrfams/DownloadFile.cgi?file=/opt/www/w… Read more Biopython Alignio Valueerror Says Strings Must Be Same Length?
Biopython Pdb: Calculate Distance Between An Atom And A Point

Biopython Pdb: Calculate Distance Between An Atom And A Point

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Using a typical pdb file, I am able to calculate the distance between two atoms in a structure usin… Read more Biopython Pdb: Calculate Distance Between An Atom And A Point