Skip to content Skip to sidebar Skip to footer
Showing posts with the label Bioinformatics
Biopython Alignio Valueerror Says Strings Must Be Same Length?

Biopython Alignio Valueerror Says Strings Must Be Same Length?

Post a Comment
Input fasta-format text file: http://www.jcvi.org/cgi-bin/tigrfams/DownloadFile.cgi?file=/opt/www/w… Read more Biopython Alignio Valueerror Says Strings Must Be Same Length?
Optimization Of An All-paths Algorithm

Optimization Of An All-paths Algorithm

Post a Comment
I've been successful using the following algorithm to complete all-path data up to path length … Read more Optimization Of An All-paths Algorithm
Single Linkage Clustering Of Edit Distance Matrix With Distance Threshold Stopping Criterion

Single Linkage Clustering Of Edit Distance Matrix With Distance Threshold Stopping Criterion

Post a Comment
I'm trying to assign flat, single-linkage clusters to sequence IDs separated by an edit distanc… Read more Single Linkage Clustering Of Edit Distance Matrix With Distance Threshold Stopping Criterion
Finding Common Id's (intersection) In Two Dictionaries

Finding Common Id's (intersection) In Two Dictionaries

Post a Comment
I wrote a piece of code that is supposed to find common intersecting ID's in line[1] in two dif… Read more Finding Common Id's (intersection) In Two Dictionaries
Snakemake - Dynamically Derive The Targets From Input Files

Snakemake - Dynamically Derive The Targets From Input Files

Post a Comment
I have a large number of input files organized like this: data/ ├── set1/ │ ├── file1_R1.fq.gz │ … Read more Snakemake - Dynamically Derive The Targets From Input Files
Using The Reserved Word "class" As Field Name In Django And Django REST Framework

Using The Reserved Word "class" As Field Name In Django And Django REST Framework

Post a Comment
Description of the problem Taxonomy is the science of defining and naming groups of biological orga… Read more Using The Reserved Word "class" As Field Name In Django And Django REST Framework